Following software developed in Human Genome Center are available. HGC
ftp server provides mirrors of some databases.
1000 Genomes database (JPT only) by 1000 Genomes Project.
Resources provided at NCBI (National Center for Biotechnology Information) including Genomes, SNP, Taxonomy, GEO etc. in addition to the GenBank, RefSeq, and UniGene databases.
Integrated protein family database by EBI.
Software provided by other research institutions
Similarity search program package BLAST and its compiled databases.
Similarity search program package FASTA, also including SSEARCH.
ClustalW: Multiple sequence alignment program.
ClustalX: Graphical user interface for the ClustalW.
Phylogenetic analysis program package.
HMMER: Protein family search program by profile hidden Markov models.
INFERNAL: RNA family search program by covariance models.
Integrated program package for sequence analysis.
Protein family search program for the InterPro database.
exonerate: Generic sequence comparison program including protein to genomic DNA mapping.
Wise2: Program for comparing a protein sequence to a genomic DNA.
Program for discovering motifs within the sequences.