1991

• The Ministry of Education, Science, Sports, and Culture started the Human Genome Project and Human Genome Center (Laboratory of Genome Database) was established as its standard-bearer.

1992

• Laboratory of Structure Genomics started.

• A prefabricated building of the center was completed.

1993

• A super parallel computer system was introduced.

• Laboratory of DNA Information Analysis started.

1996

• The MESSC human genome project proceeded from its first stage to the second stage.

• Laboratory of Molecular Medicine and Laboratory of Genome Technology started.

1997

• The main building of Human Genome Center was completed.

• A supercomputer system for genome informatics was introduced.

2000

• Laboratory of Sequence Analysis and Laboratory of Functional Analysis in silico started.

2003

• The building of multidisciplinary research was completed.

2006

• Department of Public Policy started.

2007

• Division of Systems Biomedical Technology started.

2009

• The supercomputer system "Shirokane1" was introduced.

2011

• Division of Interactome Medical Sciences started.

2012

• The supercomputer system "Shirokane2" was introduced.

2015

• The supercomputer system "Shirokane3" was introduced.

2017

• The supercomputer system "Shirokane4" was introduced.

2019

• The supercomputer system "Shirokane5" was introduced.